| 1 | Gjuzikj Marko | 2006 | MKD S.C. Skopje | 01'01''68 | 464 |  |  | |
50m 28.46 (28.46) 100m 1:01.68 (33.22) [1:01.68] |
| 2 | Nedelkovski David | 2009 | MKD S.C. Skopje | 01'06''15 | 376 |
| 3 | Hashani Butrint | 2007 | KOS Swimming Club Prishtina | 01'14''15 | 267 | | | |
50m 33.25 (33.25) 100m 1:14.15 (40.90) [1:14.15] |
| 4 | Cekov Vlatko | 2012 | MKD Swimming And Waterpolo Klub Vardar 8 Skopje | 01'14''72 | 261 | | | |
50m 34.69 (34.69) 100m 1:14.72 (40.03) [1:14.72] |
| 5 | Popovski Aleksandar | 2010 | MKD Plivacki Klub Mladost Skopje | 01'14''90 | 259 | | | |
50m 35.55 (35.55) 100m 1:14.90 (39.35) [1:14.90] |
| 6 | Ostrosi Regis | 2010 | ALB Swimming Club Nobis Tirana | 01'19''88 | 214 | | | |
50m 34.66 (34.66) 100m 1:19.88 (45.22) [1:19.88] |
| 7 | Petrovski David | 2009 | MKD Swimming And Waterpolo Klub Vardar 8 Skopje | 01'23''81 | 185 | | | |
50m 39.09 (39.09) 100m 1:23.81 (44.72) [1:23.81] |
| 8 | Kotev Stojmenov Maksim | 2007 | MKD Swimming And Waterpolo Club Orion Skopje | 01'25''44 | 174 | | | |
50m 38.72 (38.72) 100m 1:25.44 (46.72) [1:25.44] |
| 9 | Ivanovski Jovan | 2011 | MKD Plivacki Klub Beta Shark Skopje | 01'29''60 | 151 | | | |
50m 42.28 (42.28) 100m 1:29.60 (47.32) [1:29.60] |
| 10 | Bakiu Eros | 2013 | KOS Swimming Club Step Prishtina | 01'33''02 | 135 | | | |
50m 40.92 (40.92) 100m 1:33.02 (52.10) [1:33.02] |
| 11 | Cadinoski Viktor | 2011 | MKD Oktopod | 01'36''27 | 122 |
| 12 | Recica Shkemb | 2012 | KOS Swimming Club Kastrioti | 01'37''31 | 118 | | | |
50m 43.79 (43.79) 100m 1:37.31 (53.52) [1:37.31] |
| 13 | Selmani Erion | 2008 | KOS Kosovo | 01'37''77 | 116 | | | |
50m 44.61 (44.61) 100m 1:37.77 (53.16) [1:37.77] |
| 14 | Vranishkovski Viktor | 2012 | MKD Plivacki Klub Beta Shark Skopje | 01'44''90 | 94 |
| 15 | Ivanovski Nikola | 2011 | MKD Swimming Club Delfin Skopje | 01'49''66 | 82 |
