| 1 | Sillaste Dmitri | 2007 | EST Parnu Spordikool | 01'01''41 | 516 |  |  | |
50m 27.19 (27.19) 100m 1:01.41 (34.22) [1:01.41] |
| 2 | Pashenkov Anton | 2006 | EST Tuk | 01'01''54 | 513 | | | |
50m 27.46 (27.46) 100m 1:01.54 (34.08) [1:01.54] |
| 3 | Anja Erik | 2004 | EST Ujumise Spordiklubi | 01'02''30 | 494 | | | |
50m 28.06 (28.06) 100m 1:02.30 (34.24) [1:02.30] |
| 4 | Saulep Silver | 2006 | EST Parnu Spordikool | 01'03''98 | 456 | | | |
50m 29.97 (29.97) 100m 1:03.98 (34.01) [1:03.98] |
| 5 | Laurimaa Mikk | 2010 | EST Myfitness | 01'05''20 | 431 | | | |
50m 30.13 (30.13) 100m 1:05.20 (35.07) [1:05.20] |
| 6 | Kolossov Matfei | 2007 | EST Parnu Spordikool | 01'08''60 | 370 | | | |
50m 31.92 (31.92) 100m 1:08.60 (36.68) [1:08.60] |
| 7 | Michelson Sebastian | 2010 | EST Ujumise Spordiklubi | 01'10''72 | 338 | | | |
50m 31.58 (31.58) 100m 1:10.72 (39.14) [1:10.72] |
| 8 | Jarvmagi Richard | 2007 | EST Parnu Spordikool | 01'15''04 | 283 | | | |
50m 33.58 (33.58) 100m 1:15.04 (41.46) [1:15.04] |
| 9 | Viira Arthur | 2011 | EST Yess | 01'16''01 | 272 | | | |
50m 35.91 (35.91) 100m 1:16.01 (40.10) [1:16.01] |
| 10 | Idnurm Simon | 2011 | EST Keila Swimclub | 01'16''25 | 269 | | | |
50m 37.09 (37.09) 100m 1:16.25 (39.16) [1:16.25] |
| 11 | Vatsenko Aleksandr | 2008 | EST Kohtla-Jarve Spordiselts Kalev | 01'16''45 | 267 | | | |
50m 37.99 (37.99) 100m 1:16.45 (38.46) [1:16.45] |
| 12 | Radionov Ilja | 2007 | EST Kohtla-Jarve Spordiselts Kalev | 01'16''89 | 263 | | | |
50m 36.67 (36.67) 100m 1:16.89 (40.22) [1:16.89] |
| 13 | Tammaru Richard Toomas | 2011 | EST Yess | 01'19''44 | 238 | | | |
50m 36.38 (36.38) 100m 1:19.44 (43.06) [1:19.44] |
| 14 | Korjus Rasmus | 2006 | EST Wiru Swim | 01'20''31 | 231 | | | |
50m 35.82 (35.82) 100m 1:20.31 (44.49) [1:20.31] |
