| 1 | Ale Martin | 2009 | EST Ujumise Spordiklubi | 00'55''49 | 527 |  |  | |
50m 26.63 (26.63) 100m 55.49 (28.86) [55.49] |
| 2 | Priks Robin | 2010 | EST Ujumise Spordiklubi | 00'55''71 | 521 | | | |
50m 26.63 (26.63) 100m 55.71 (29.08) [55.71] |
| 3 | Mikker Mikk Johann | 2010 | EST Tuk | 01'00''55 | 406 | | | |
50m 29.08 (29.08) 100m 1:00.55 (31.47) [1:00.55] |
| 4 | Idnurm Sebastian | 2009 | EST Keila Swimclub | 01'00''84 | 400 | | | |
50m 28.38 (28.38) 100m 1:00.84 (32.46) [1:00.84] |
| 5 | Tiido Karel | 2009 | EST Keila Swimclub | 01'01''98 | 378 | | | |
50m 29.84 (29.84) 100m 1:01.98 (32.14) [1:01.98] |
| 6 | Miljan Sebastian | 2010 | EST Parnu Spordikool | 01'02''33 | 372 | | | |
50m 29.34 (29.34) 100m 1:02.33 (32.99) [1:02.33] |
| 7 | Saagpakk Sass Johann | 2009 | EST Parnu Spordikool | 01'03''40 | 353 | | | |
50m 30.63 (30.63) 100m 1:03.40 (32.77) [1:03.40] |
| 8 | Petenberg Nikita | 2009 | EST Parnu Spordikool | 01'04''35 | 338 | | | |
50m 31.46 (31.46) 100m 1:04.35 (32.89) [1:04.35] |
| 9 | Zaytsev Vsevolod | 2010 | EST Spordiklubi Aquaway | 01'04''41 | 337 | | | |
50m 30.55 (30.55) 100m 1:04.41 (33.86) [1:04.41] |
| 10 | Reimann Raner | 2010 | EST Parnu Spordikool | 01'04''83 | 330 | | | |
50m 31.00 (31.00) 100m 1:04.83 (33.83) [1:04.83] |
| 11 | Massakas Simon | 2010 | EST Yess | 01'06''18 | 311 | | | |
50m 31.82 (31.82) 100m 1:06.18 (34.36) [1:06.18] |
| 12 | Aleksandrov Martin | 2009 | EST Myfitness | 01'06''53 | 306 | | | |
50m 31.12 (31.12) 100m 1:06.53 (35.41) [1:06.53] |
| 13 | Korjus Rasmus | 2006 | EST Wiru Swim | 01'08''56 | 279 | | | |
50m 32.06 (32.06) 100m 1:08.56 (36.50) [1:08.56] |
