| 1 | Henry Arrenous Pierre | 1998 | FRA Lyon Natation Metropole | 00'55''33 | 716 |  |  | |
50m 25.78 (25.78) 100m 55.33 (29.55) [55.33] |
| 2 | Aguilar Urtxegi Xabier | 2000 | ESP Euskal Herria | 00'56''03 | 689 | | | |
50m 26.67 (26.67) 100m 56.03 (29.36) [56.03] |
| 3 | Arruabarrena Mayor Unai | 2001 | ESP Sant Andreu | 00'57''25 | 646 | | | |
50m 26.93 (26.93) 100m 57.25 (30.32) [57.25] |
| 4 | Aguilar Elizalde Javier | 2001 | ESP Euskal Herria | 00'57''29 | 645 | | | |
50m 26.27 (26.27) 100m 57.29 (31.02) [57.29] |
| 5 | Lomero Arenas Bernat | 1997 | ESP C.N. Lleida | 00'57''84 | 626 | | | |
50m 26.25 (26.25) 100m 57.84 (31.59) [57.84] |
| 6 | Pampin Domingo Yoel | 2000 | USA Getxo Igeriketa Bolue K.E | 00'58''48 | 606 | | | |
50m 27.39 (27.39) 100m 58.48 (31.09) [58.48] |
| 7 | Escalada Lacruz Jordi | 2003 | ESP Sant Andreu | 00'58''80 | 596 | | | |
50m 27.55 (27.55) 100m 58.80 (31.25) [58.80] |
| 8 | Ginzburg Eric | 2004 | CAN Canada | 00'59''16 | 585 | | | |
50m 27.24 (27.24) 100m 59.16 (31.92) [59.16] |
| 9 | Soto Garcia Iker | 2004 | ESP Club Deportivo Bidasoa | 00'59''28 | 582 | | | |
50m 27.44 (27.44) 100m 59.28 (31.84) [59.28] |
| 10 | Ruiz Rodriguez Guillermo | 1997 | ESP C.D.N. Inacua Malaga | 00'59''36 | 579 | | | |
50m 27.74 (27.74) 100m 59.36 (31.62) [59.36] |
| 11 | Lecoq Villaverde Yann | 2003 | AND Andorra | 01'00''16 | 557 | | | |
50m 28.05 (28.05) 100m 1:00.16 (32.11) [1:00.16] |
| 12 | Garmendia Otaegi Markel | 2005 | ESP Tolosaldea Usabal Igeri Kirol Taldea | 01'00''43 | 549 | | | |
50m 28.42 (28.42) 100m 1:00.43 (32.01) [1:00.43] |
| 13 | Carrey Bosque Guillermo | 2005 | ESP Club E.M. Ei Olivar | 01'00''47 | 548 | | | |
50m 28.27 (28.27) 100m 1:00.47 (32.20) [1:00.47] |
| 14 | Zornoza Quiros Alvaro | 2005 | ESP R.G.C. Covadonga | 01'00''63 | 544 | | | |
50m 27.83 (27.83) 100m 1:00.63 (32.80) [1:00.63] |
| 15 | Hernandez Troya Gerard | 2003 | ESP Sant Andreu | 01'00''72 | 541 | | | |
50m 28.65 (28.65) 100m 1:00.72 (32.07) [1:00.72] |
| 16 | Ruiz Gimeno Toni | 2005 | ESP C.N. Calella | 01'00''95 | 535 | | | |
50m 28.40 (28.40) 100m 1:00.95 (32.55) [1:00.95] |
| 17 | Gomez Gredilla Urtats | 2005 | ESP Galdakao I.t. | 01'01''06 | 532 | | | |
50m 29.14 (29.14) 100m 1:01.06 (31.92) [1:01.06] |
| 18 | San Nicolas Pipaon Iker | 2001 | ESP Gernika-Kosnoaga I.t. | 01'01''53 | 520 | | | |
50m 28.34 (28.34) 100m 1:01.53 (33.19) [1:01.53] |
| 19 | Deba Iborra Mikel | 1988 | USA Getxo Igeriketa Bolue K.E | 01'01''57 | 519 | | | |
50m 28.05 (28.05) 100m 1:01.57 (33.52) [1:01.57] |
| 20 | Agirrebaltzategi Durana Benat | 2002 | ESP Club Natacion Judizmendi | 01'01''61 | 518 | | | |
50m 28.11 (28.11) 100m 1:01.61 (33.50) [1:01.61] |
| 21 | Mellado Rodriguez David | 2004 | ESP Sant Andreu | 01'01''90 | 511 | | | |
50m 29.01 (29.01) 100m 1:01.90 (32.89) [1:01.90] |
| 22 | Marquez Fuentes Santiago | 1997 | ESP C.M.N. Arganda | 01'01''92 | 510 | | | |
50m 28.66 (28.66) 100m 1:01.92 (33.26) [1:01.92] |
| 23 | Barrera La Torre Iker | 2004 | ESP Sant Andreu | 01'02''08 | 506 | | | |
50m 28.77 (28.77) 100m 1:02.08 (33.31) [1:02.08] |
| 24 | Etxeberria Cortes Roke | 2001 | ESP Eibar Igerixan | 01'02''20 | 504 | | | |
50m 29.12 (29.12) 100m 1:02.20 (33.08) [1:02.20] |
| 25 | Cayetano Infante Alejandro | 2005 | ESP Club E.M. Ei Olivar | 01'02''28 | 502 | | | |
50m 29.01 (29.01) 100m 1:02.28 (33.27) [1:02.28] |
| 26 | Carbo Basterretxea Izei | 2003 | ESP Gernika-Kosnoaga I.t. | 01'03''52 | 473 | | | |
50m 29.40 (29.40) 100m 1:03.52 (34.12) [1:03.52] |
| 27 | Ilzarbe Daza Benat | 2006 | ESP C.D. Fortuna | 01'04''32 | 455 | | | |
50m 30.80 (30.80) 100m 1:04.32 (33.52) [1:04.32] |
| 28 | Hervias Fernandez Pablo | 2004 | ESP C.n. Menditxo | 01'05''00 | 441 | | | |
50m 29.90 (29.90) 100m 1:05.00 (35.10) [1:05.00] |
| 29 | Tellado Elizetxea Asier | 2003 | ESP Club Deportivo Bidasoa | 01'06''73 | 408 | | | |
50m 30.85 (30.85) 100m 1:06.73 (35.88) [1:06.73] |
| | Bidaurre Fernandez Urtats | 2004 | ESP Cd Amaya Natacion | Squalificato | |
| | Ruiz Diaz Gonzalo | 2001 | ESP Club E.M. Ei Olivar | Squalificato | |
